ClassifySGS_Multiple: ClassifySGS_Multiple
In bimberlabinternal/OOSAP: OHSU-ONPRC Single-cell Analysis Package
Description
Usage
Arguments
Value
View source: R/Classification_SGS.R
Description
This will classify cells in a seurat object using a list of gene sets
Usage
1
2
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5
ClassifySGS_Multiple(
seuratObj,
moduleScoreGeneLists = NULL,
saveFilePath = NULL
)
Arguments
seuratObj
The seurat object
moduleScoreGeneLists
A named list of character vectors, where each vector is the set of genes to score
saveFilePath
If provided, the datframe will be saved here
Value
A dataframe with the results per cell, for all gene sets
bimberlabinternal/OOSAP documentation built on Jan. 19, 2021, 2:47 a.m.
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Description Usage Arguments Value
View source: R/Classification_SGS.R
Description
This will classify cells in a seurat object using a list of gene sets
Usage
1 2 3 4 5 | ClassifySGS_Multiple(
seuratObj,
moduleScoreGeneLists = NULL,
saveFilePath = NULL
)
|
Arguments
seuratObj |
The seurat object |
moduleScoreGeneLists |
A named list of character vectors, where each vector is the set of genes to score |
saveFilePath |
If provided, the datframe will be saved here |
Value
A dataframe with the results per cell, for all gene sets
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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