PerformEmptyDrops: PerformEmptyDrops
In bimberlabinternal/OOSAP: OHSU-ONPRC Single-cell Analysis Package
Description
Usage
Arguments
Value
Description
PerformEmptyDrops
Usage
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PerformEmptyDrops(
seuratRawData,
emptyDropNIters,
fdrThreshold = 0.01,
emptyDropsLower = 100
)
Arguments
seuratRawData
Raw data
emptyDropNIters
Number of iterations, passed directly to PerformEmptyDrops()
fdrThreshold
FDR threshold, passed directly to PerformEmptyDrops()
emptyDropsLower
Passed directly to emptyDrops(). The lower bound on the total UMI count, at or below which all barcodes are assumed to correspond to empty droplets.
Value
A modified Seurat object.
bimberlabinternal/OOSAP documentation built on Jan. 19, 2021, 2:47 a.m.
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Description Usage Arguments Value
Description
PerformEmptyDrops
Usage
1 2 3 4 5 6 | PerformEmptyDrops(
seuratRawData,
emptyDropNIters,
fdrThreshold = 0.01,
emptyDropsLower = 100
)
|
Arguments
seuratRawData |
Raw data |
emptyDropNIters |
Number of iterations, passed directly to PerformEmptyDrops() |
fdrThreshold |
FDR threshold, passed directly to PerformEmptyDrops() |
emptyDropsLower |
Passed directly to emptyDrops(). The lower bound on the total UMI count, at or below which all barcodes are assumed to correspond to empty droplets. |
Value
A modified Seurat object.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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