PerformEmptyDropletFiltering: PerformEmptyDropletFiltering
In bimberlabinternal/OOSAP: OHSU-ONPRC Single-cell Analysis Package
Description
Usage
Arguments
Value
Description
PerformEmptyDropletFiltering
Usage
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PerformEmptyDropletFiltering(
seuratRawData,
fdrThreshold = 0.01,
emptyDropNIters = 10000,
emptyDropsLower = 100
)
Arguments
seuratRawData
Raw data
fdrThreshold
FDR threshold, passed directly to PerformEmptyDrops()
emptyDropNIters
Number of iterations, passed directly to PerformEmptyDrops()
emptyDropsLower
Passed directly to emptyDrops(). The lower bound on the total UMI count, at or below which all barcodes are assumed to correspond to empty droplets.
Value
Plot
bimberlabinternal/OOSAP documentation built on Jan. 19, 2021, 2:47 a.m.
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Description Usage Arguments Value
Description
PerformEmptyDropletFiltering
Usage
1 2 3 4 5 6 | PerformEmptyDropletFiltering(
seuratRawData,
fdrThreshold = 0.01,
emptyDropNIters = 10000,
emptyDropsLower = 100
)
|
Arguments
seuratRawData |
Raw data |
fdrThreshold |
FDR threshold, passed directly to PerformEmptyDrops() |
emptyDropNIters |
Number of iterations, passed directly to PerformEmptyDrops() |
emptyDropsLower |
Passed directly to emptyDrops(). The lower bound on the total UMI count, at or below which all barcodes are assumed to correspond to empty droplets. |
Value
Plot
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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