Man pages for bioarch-sjh/bacollite
analysis of MALDI and LC-MS/MS spectral data using sequence data (mainly for collagen)

ba_gxy_probsCalculate the 'GXY' frame of a peptide, and use probabilities...
ba_nhydCalculate the probability of each possible number of...
ba_plotseqpeaksplot the peaks of a mass spec
helloHello, World!
lag_plotPlot the lag correction and fit a line to it for a peptide...
load.gpmLoad a set of peptides from the Global Protein Machine
load.gpm.rawLoad a set of peptides from the Global Protein Machine
load.human.markersLoad a set of peptide markers for human
load.mcsLoad peptides from the mammalian collagen sequences...
load.sampleLoad mass spec data from a 2-column space-delimited text file
load.sequenceLoad sequences from the mammalian collagen sequences...
ms_alignAlign a theoretical peptide with a mass spec
ms_fitMatch a set of peptides with a Mass Spec
ms_isoObtain the isotope distribution for an amino acid sequence...
ms_iso_atomObtain the isotope distribution for a molecule consisting of...
ms_subrangeGet all spectrum data between a mass range
ms_tpeaksWrapper for the 'R_iso_seq' q2e c function, to get...
parse.seqParse an amino acid sequence into a set of peptides,...
peptide.ratioGet the ratio of ion counts for two peptides
seq_to_atomsCalculate the atoms in an amino acid sequence...
timesTwoMultiply a number by two
ts_indexGet the species index in the mammalian_collagen_sequences...
validseqThis checks if the letters in a sequence are all valid amino...
xy.ypos.prolinescount the prolines in the x and y position of a collagen...
bioarch-sjh/bacollite documentation built on Dec. 13, 2018, 10:28 p.m.