ba_gxy_probs: Calculate the 'GXY' frame of a peptide, and use probabilities...

Description Usage Arguments Examples

View source: R/ba_gxy_probs.R

Description

Calculate the 'GXY' frame of a peptide, and use probabilities of hdroxylation for prolines at different positions to estimate the probability of every possible level of hydroxylation

Usage

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ba_gxy_probs(seq, xprob = 0.05, yprob = 0.95, xyxprob = 0.5,
  xyyprob = 0.99, verbose = F)

Arguments

seq

a peptide sequence

xprob

the probability of hydroxylation at the X position

yprob

the probability of hydroxylation at the Y position

xyxprob

the probability of hydroxylation at the X position if the Y position is also Proline

xyyprob

the probability of hydroxylaiton at the Y position if the X position is also Proline

verbose

set to TRUE for more verbose processing

Examples

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bioarch-sjh/bacollite documentation built on Dec. 13, 2018, 10:28 p.m.