pplate: Process a MALDI plate of replicates

In bioarch-sjh/bacollite: Analysis of MALDI and LC-MS/MS spectral data using sequence data (mainly for collagen)

Process a MALDI plate of replicates

Description

Process a MALDI plate of replicates

Usage

pplate(path, pd, FUN = NULL, ...)

Arguments

path	the relative path to the data from where the function is called
pd	dataframe containing the following fields: * frootThe common part of the file name, e.g. "20211017_Filey_" as part of "20211017_Filey_A1.txt" * sampleIDA name for the sample, e.g. "A420" * spot1The location of spot1, e.g. "A1" * spot2The location of spot2, e.g. "A4" * spot3The location of spot3, e.g. "A7"
FUN	the processing function, e.g. "averageMSD"
ts	theoretical spectrum peaks for a particular peptide

bioarch-sjh/bacollite documentation built on Oct. 7, 2022, 3:34 p.m.