Files in bioinform/ecTMB
Esitmation and Classification of TMB
DESCRIPTION
LICENSE.md
NAMESPACE
R/.Rhistory
R/TMBpred.R
R/ecTMB.R
R/procMaf.R
R/stats.R
R/utils.R
README.md
inst/nf/bed2vcf.changes.pl
inst/nf/create.exome.Rdata.R
inst/nf/ecTMB_refbuild.nf
inst/nf/nextflow.config
inst/nf/process.maf.output.pl
inst/nf/process.vep.output.pl
inst/perl/Sequence_Retrieve.pl
inst/stan/NB_bs.stan
inst/stan/NB_bs2.stan
inst/stan/NB_bs3.stan
inst/stan/Poisson_bs.stan
inst/stan/Poisson_bs2.stan
inst/stan/Poisson_bs3.stan
inst/stan/ZIP.stan
inst/stan/ZIPmix.stan
inst/stan/ZIPmix_bs.stan
inst/stan/ZIPmix_bs2.stan
inst/stan/ZIPmix_bs3.stan
man/CM.Rd
man/CalTMB.Rd
man/ConvertExtraType.Rd
man/ExGMM.Rd
man/Get_incon_mut.Rd
man/MutSet.Rd
man/OverLap.Rd
man/assignClass.Rd
man/calMut.Rd
man/checkMutC.Rd
man/count_Mut.Rd
man/fit_model.Rd
man/getBgMRtri.Rd
man/getEnsemblID.Rd
man/getGeneBgProb.Rd
man/getGeneSymbol.Rd
man/getTMBs.Rd
man/get_exomeGene.Rd
man/get_genewise_dispersion_mle_mu.Rd
man/get_glen.Rd
man/get_mu_hat_mle.Rd
man/get_mu_phi.Rd
man/get_muhat.Rd
man/get_zip_pairparam_mle.Rd
man/getmu_post_optimize.Rd
man/getsigma.Rd
man/getsubData.Rd
man/getzero_p.Rd
man/loadfile.Rd
man/mafCleanup.Rd
man/maf_dnp_converter.Rd
man/pred_TMB.Rd
man/readData.Rd
man/remove_outliers.Rd
man/retrieve_context.Rd
man/zipMLE.Rd
