pred_TMB: pred_TMB

In bioinform/ecTMB: Esitmation and Classification of TMB

Description

fit the data distribution to a mixture of Gaussian mixture

Usage

pred_TMB(x, params, WES = NULL, prior = list(mu = prior_bs$mu, sigma =
  prior_bs$sigma, lambda = prior_bs$lambda), mut.nonsil = FALSE,
  gid_nonsil_p = NULL, method = "MLE", cores = 10, span = 1,
  low = 10^(-4), high = 10^4)

Arguments

x	test mutSet object
params	A list contain result from fit
WES	test mutSet object which contain whole exome data which will be used to generate the truth.
prior	A list contain prior parameters
mut.nonsil	A boolen. If it is TRUE, the nonsilent mutation will be used for prediction
gid_nonsil_p	A vector of gid for passenger genes
method	A string which specify the method to predict the TMB
cores	A number which specifiy the nubmer of core to use for parallel computing.
span	The extension of low and high limit. High = high * span and low = low/span
low	The lower limit.
high	The higher limit.

Value

A data.frame contain the result.

Examples

## Not run: 
pred_TMB(Data)

## End(Not run)

bioinform/ecTMB documentation built on Aug. 29, 2021, 6:17 p.m.