getTMBs: getTMBs

In bioinform/ecTMB: Esitmation and Classification of TMB

Description

predict TMB stat function

Usage

getTMBs(y, offset, phi, cores, zero_p = 0, prior = NULL, span = 10,
  low = 10^(-4), high = 10^4)

Arguments

y	A matrix for observed mutation count
offset	offset
phi	gene dispersion
cores	A number which specifiy the nubmer of core to use for parallel computing.
zero_p	gene zero fraction
prior	prior parameters. If it is NULL, no prior will be used.
span	The extension of low and high limit. High = high * span and low = low/span
low	The lower limit.
high	The higher limit.

Value

A data.frame contain the result.

Examples

## Not run: 
getTMBs(Data)

## End(Not run)

bioinform/ecTMB documentation built on Aug. 29, 2021, 6:17 p.m.