readData: read and load maf file and necessary reference file
In bioinform/ecTMB: Esitmation and Classification of TMB
Description
Usage
Arguments
Value
Description
read and load maf file and necessary reference file
Usage
1
Arguments
mutf
Path to maf file. Detail see mafCleanup.
exomef
Path to exome file
covarf
Path to covariable file
mutContextf
Path to mutContext file.
ref
Path to reference genome
samplef
Path to sample file or data.frame. The column name to specify bed file must be BED
Value
a MutSet
bioinform/ecTMB documentation built on Aug. 29, 2021, 6:17 p.m.
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Description Usage Arguments Value
Description
read and load maf file and necessary reference file
Usage
1 |
Arguments
mutf |
Path to maf file. Detail see |
exomef |
Path to exome file |
covarf |
Path to covariable file |
mutContextf |
Path to mutContext file. |
ref |
Path to reference genome |
samplef |
Path to sample file or data.frame. The column name to specify bed file must be BED |
Value
a MutSet
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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