OverLap: OverLap

In bioinform/ecTMB: Esitmation and Classification of TMB

Description

OverLap

Usage

OverLap(Bed, regions, base0 = FALSE)

Arguments

Bed	targeted bed file. data.frame contain colunms "Chromosome" "Start" "End"
regions	path to bed file or data.frame
base0	A boolen if it is 0 based.

Value

a list of row number which targetBed overlap with regions.

Examples

## Not run: 
  exomebed        = data.frame(Chromosome = exome[, "Chromosome"],
  Start = exome[, "pos"],
  End = exome[,"pos"])
  OverLap(exomebed, regions)

## End(Not run)

bioinform/ecTMB documentation built on Aug. 29, 2021, 6:17 p.m.