count_Mut: Count mutatin per patient or per mutation tri-nuclear...

In bioinform/ecTMB: Esitmation and Classification of TMB

Description

Count mutatin per patient or per mutation tri-nuclear context.

Usage

count_Mut(mut, gid = NULL, sampleN = NULL, byContext = FALSE)

Arguments

mut	data frame contain mutation info which must contain 'Start_Position' and 'Tumor_Sample_Barcode' or exomeGene - data.frame.
gid	default is NULL. provide gid list
sampleN	default is NULL. Provide list of sample name. This parameter is only useful when byContext is FALSE
byContext	A boolen. If TRUE, the number of mutation per tri-nucleotide context will be reported. If FALSE, the number of mutation per patient will be reported. Default is FALSE.

Value

mutCount data.frame contain number of mutation for each patient or a vector contains number of mutation per tri-nucleotide context

Examples

## Not run: 
count_Mut(mut)

## End(Not run)

bioinform/ecTMB documentation built on Aug. 29, 2021, 6:17 p.m.