bm_ModelAnalysis: Analyze the residuals of the single models

In biomodhub/biomod2: Ensemble Platform for Species Distribution Modeling

Analyze the residuals of the single models

Description

This function return differents graphs to help analyse the single models.

Usage

bm_ModelAnalysis(
  bm.mod,
  models.chosen = "all",
  do.plot = TRUE,
  color.by = "full.name"
)

Arguments

bm.mod	a BIOMOD.models.out
models.chosen	a vector containing model names to be kept, must be either all or a sub-selection of model names that can be obtained with the get_built_models function
do.plot	a logical, print the plots or not
color.by	a character between "full.name", "species", "PA", "RUN" or "algo"

Details

All the plots will be made for the models, independently to the different models assumptions. It is up to the user to interpret the graphs in the light of the model assumptions.

Value

1. a plot residuals ~ observations to detect outliers

2. a histogramm of the residuals

3. a qqplot of the residuals

4. plot residuals ~ fitted

5. a plot of the different Rsquared available (Rsquared, Rsquared_aj, Psquared)

Author(s)

Hélène Blancheteau

biomodhub/biomod2 documentation built on March 29, 2025, 1:14 p.m.