Files in biomodhub/biomod2
Ensemble Platform for Species Distribution Modeling
.Rbuildignore
.github/.gitignore
.github/ISSUE_TEMPLATE/bug_report.md
.github/ISSUE_TEMPLATE/empty-template.md
.github/ISSUE_TEMPLATE/feature_request.md
.github/ISSUE_TEMPLATE/help-wanted.md
.github/ISSUE_TEMPLATE/modeling-question.md
.github/workflows/R-CMD-check.yml
.gitignore
DESCRIPTION
NAMESPACE
R/BIOMOD_EnsembleForecasting.R
R/BIOMOD_EnsembleModeling.R
R/BIOMOD_FormatingData.R
R/BIOMOD_LoadModels.R
R/BIOMOD_Modeling.R
R/BIOMOD_Projection.R
R/BIOMOD_RangeSize.R
R/DEPRECATED.R
R/biomod2-package.R
R/biomod2_classes_0.R
R/biomod2_classes_1.R
R/biomod2_classes_2.R
R/biomod2_classes_3.R
R/biomod2_classes_4.R
R/biomod2_classes_5.R
R/biomod2_data.R
R/biomod2_globalVariables.R
R/biomod2_internal.R
R/bm_BinaryTransformation.R
R/bm_CrossValidation.R
R/bm_FindOptimStat.R
R/bm_MakeFormula.R
R/bm_ModelingOptions.R
R/bm_PlotEvalBoxplot.R
R/bm_PlotEvalMean.R
R/bm_PlotRangeSize.R
R/bm_PlotResponseCurves.R
R/bm_PlotVarImpBoxplot.R
R/bm_PseudoAbsences.R
R/bm_RunModelsLoop.R
R/bm_SRE.R
R/bm_SampleBinaryVector.R
R/bm_SampleFactorLevels.R
R/bm_Tuning.R
R/bm_VariablesImportance.R
R/sysdata.rda
R/zzz.R
README.md
_pkgdown.yml
data/DataSpecies.rda
data/ModelsTable.rda
data/OptionsBigboss.rda
data/bioclim_current.rda
data/bioclim_future.rda
docs/404.html
docs/articles/examples_1_mainFunctions.html
docs/articles/examples_2_secundaryFunctions.html
docs/articles/index.html
docs/articles/news.html
docs/articles/pictures/CVschema.png
docs/articles/pictures/LogoBiomod.png
docs/articles/pictures/MyBiomodData_With_CalibLines.png
docs/articles/pictures/SCHEMA_BIOMOD2_WORKFLOW_functions.pdf
docs/articles/pictures/SCHEMA_BIOMOD2_WORKFLOW_functions.png
docs/articles/pictures/biomod2_presentation.workflow_05_2024.pdf
docs/articles/pictures/dataPreparation_plot1.png
docs/articles/pictures/examples_2_plot1.png
docs/articles/pictures/examples_2_plot2.png
docs/articles/vignette_Abundance.html
docs/articles/vignette_crossValidation.html
docs/articles/vignette_dataPreparation.html
docs/articles/vignette_modelingOptions.html
docs/articles/vignette_presentation.html
docs/articles/vignette_pseudoAbsences.html
docs/articles/vignette_variability.html
docs/articles/vignette_videos.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/reference/BIOMOD.ensemble.models.out.html
docs/reference/BIOMOD.formated.data.PA.html
docs/reference/BIOMOD.formated.data.html
docs/reference/BIOMOD.models.options.html
docs/reference/BIOMOD.models.out.html
docs/reference/BIOMOD.options.dataset.html
docs/reference/BIOMOD.options.default.html
docs/reference/BIOMOD.projection.out.html
docs/reference/BIOMOD.stored.data.html
docs/reference/BIOMOD_CrossValidation-deprecated.html
docs/reference/BIOMOD_EnsembleForecasting.html
docs/reference/BIOMOD_EnsembleModeling.html
docs/reference/BIOMOD_FormatingData.html
docs/reference/BIOMOD_LoadModels.html
docs/reference/BIOMOD_Modeling.html
docs/reference/BIOMOD_ModelingOptions-deprecated.html
docs/reference/BIOMOD_PresenceOnly-deprecated.html
docs/reference/BIOMOD_Projection.html
docs/reference/BIOMOD_RangeSize.html
docs/reference/BIOMOD_tuning-deprecated.html
docs/reference/BinaryTransformation-deprecated.html
docs/reference/DataSpecies.html
docs/reference/Find.Optim.Stat-deprecated.html
docs/reference/ModelsTable.html
docs/reference/OptionsBigboss.html
docs/reference/ProbDensFunc-deprecated.html
docs/reference/bioclim_current.html
docs/reference/bioclim_future.html
docs/reference/biomod2-deprecated.html
docs/reference/biomod2_ensemble_model.html
docs/reference/biomod2_model.html
docs/reference/bm_BinaryTransformation.html
docs/reference/bm_CrossValidation.html
docs/reference/bm_FindOptimStat.html
docs/reference/bm_MakeFormula.html
docs/reference/bm_ModelingOptions.html
docs/reference/bm_PlotEvalBoxplot.html
docs/reference/bm_PlotEvalMean.html
docs/reference/bm_PlotRangeSize.html
docs/reference/bm_PlotResponseCurves.html
docs/reference/bm_PlotVarImpBoxplot.html
docs/reference/bm_PseudoAbsences.html
docs/reference/bm_RunModelsLoop.html
docs/reference/bm_SRE.html
docs/reference/bm_SampleBinaryVector.html
docs/reference/bm_SampleFactorLevels.html
docs/reference/bm_Tuning.html
docs/reference/bm_VariablesImportance.html
docs/reference/calculate.stat-deprecated.html
docs/reference/check_duplicated_cells.html
docs/reference/dot-categorical2numeric.html
docs/reference/dot-get_categorical_names.html
docs/reference/dot-get_env_class.html
docs/reference/dot-load_gam_namespace.html
docs/reference/dot-transform.outputs.list-deprecated.html
docs/reference/dot-transform_model.as.col.html
docs/reference/getStatOptimValue-deprecated.html
docs/reference/getters.bm.html
docs/reference/getters.out.html
docs/reference/index.html
docs/reference/load_stored_object.html
docs/reference/makeFormula-deprecated.html
docs/reference/models_scores_graph-deprecated.html
docs/reference/plot.html
docs/reference/predict.bm.html
docs/reference/predict.em.html
docs/reference/predict2.bm.html
docs/reference/predict2.em.html
docs/reference/rast.has.values.html
docs/reference/response.plot2-deprecated.html
docs/reference/sample.factor.levels-deprecated.html
docs/reference/sre-deprecated.html
docs/reference/summary.html
docs/reference/variables_importance-deprecated.html
docs/reference/zzz_bm.html
man/BIOMOD.ensemble.models.out.Rd
man/BIOMOD.formated.data.PA.Rd
man/BIOMOD.formated.data.Rd
man/BIOMOD.models.options.Rd
man/BIOMOD.models.out.Rd
man/BIOMOD.options.dataset.Rd
man/BIOMOD.options.default.Rd
man/BIOMOD.projection.out.Rd
man/BIOMOD.stored.data.Rd
man/BIOMOD_CrossValidation-deprecated.Rd
man/BIOMOD_EnsembleForecasting.Rd
man/BIOMOD_EnsembleModeling.Rd
man/BIOMOD_FormatingData.Rd
man/BIOMOD_LoadModels.Rd
man/BIOMOD_Modeling.Rd
man/BIOMOD_ModelingOptions-deprecated.Rd
man/BIOMOD_PresenceOnly-deprecated.Rd
man/BIOMOD_Projection.Rd
man/BIOMOD_RangeSize.Rd
man/BIOMOD_tuning-deprecated.Rd
man/BinaryTransformation-deprecated.Rd
man/DataSpecies.Rd
man/Find.Optim.Stat-deprecated.Rd
man/ModelsTable.Rd
man/OptionsBigboss.Rd
man/ProbDensFunc-deprecated.Rd
man/bioclim_current.Rd
man/bioclim_future.Rd
man/biomod2-deprecated.Rd
man/biomod2_ensemble_model.Rd
man/biomod2_model.Rd
man/bm_BinaryTransformation.Rd
man/bm_CrossValidation.Rd
man/bm_FindOptimStat.Rd
man/bm_MakeFormula.Rd
man/bm_ModelingOptions.Rd
man/bm_PlotEvalBoxplot.Rd
man/bm_PlotEvalMean.Rd
man/bm_PlotRangeSize.Rd
man/bm_PlotResponseCurves.Rd
man/bm_PlotVarImpBoxplot.Rd
man/bm_PseudoAbsences.Rd
man/bm_RunModelsLoop.Rd
man/bm_SRE.Rd
man/bm_SampleBinaryVector.Rd
man/bm_SampleFactorLevels.Rd
man/bm_Tuning.Rd
man/bm_VariablesImportance.Rd
man/calculate.stat-deprecated.Rd
man/check_duplicated_cells.Rd
man/dot-categorical2numeric.Rd
man/dot-get_categorical_names.Rd
man/dot-get_env_class.Rd
man/dot-load_gam_namespace.Rd
man/dot-transform.outputs.list-deprecated.Rd
man/dot-transform_model.as.col.Rd
man/getStatOptimValue-deprecated.Rd
man/getters.bm.Rd
man/getters.out.Rd
man/load_stored_object.Rd
man/makeFormula-deprecated.Rd
man/models_scores_graph-deprecated.Rd
man/plot.Rd
man/predict.bm.Rd
man/predict.em.Rd
man/predict2.bm.Rd
man/predict2.em.Rd
man/rast.has.values.Rd
man/response.plot2-deprecated.Rd
man/sample.factor.levels-deprecated.Rd
man/sre-deprecated.Rd
man/summary.Rd
man/variables_importance-deprecated.Rd
man/zzz_bm.Rd
vignettes/examples_1_mainFunctions.Rmd
vignettes/examples_2_secundaryFunctions.Rmd
vignettes/news.Rmd
vignettes/pictures/CVschema.PNG
vignettes/pictures/LogoBiomod.png
vignettes/pictures/MyBiomodData_With_CalibLines.PNG
vignettes/pictures/SCHEMA_BIOMOD2_WORKFLOW_functions.pdf
vignettes/pictures/SCHEMA_BIOMOD2_WORKFLOW_functions.png
vignettes/pictures/biomod2_presentation.workflow_05_2024.pdf
vignettes/pictures/dataPreparation_plot1.png
vignettes/pictures/examples_2_plot1.pdf
vignettes/pictures/examples_2_plot1.png
vignettes/pictures/examples_2_plot2.pdf
vignettes/pictures/examples_2_plot2.png
vignettes/vignette_Abundance.Rmd
vignettes/vignette_crossValidation.Rmd
vignettes/vignette_dataPreparation.Rmd
vignettes/vignette_modelingOptions.Rmd
vignettes/vignette_presentation.Rmd
vignettes/vignette_pseudoAbsences.Rmd
vignettes/vignette_variability.Rmd
vignettes/vignette_videos.Rmd
