predict2.em: Functions to get predictions from 'biomod2_ensemble_model'...

In biomodhub/biomod2: Ensemble Platform for Species Distribution Modeling

Functions to get predictions from biomod2_ensemble_model objects

Description

This function allows the user to predict single models from biomod2_ensemble_model on (new) explanatory variables.

Usage

## S4 method for signature 'biomod2_ensemble_model,SpatRaster'
predict2(object, newdata, predfun, seedval = NULL, ...)

## S4 method for signature 'biomod2_ensemble_model,data.frame'
predict2(object, newdata, predfun, seedval = NULL, ...)

## S4 method for signature 'EMmean_biomod2_model,SpatRaster'
predict2(object, newdata, ...)

## S4 method for signature 'EMmean_biomod2_model,data.frame'
predict2(object, newdata, ...)

## S4 method for signature 'EMmedian_biomod2_model,SpatRaster'
predict2(object, newdata, ...)

## S4 method for signature 'EMmedian_biomod2_model,data.frame'
predict2(object, newdata, ...)

## S4 method for signature 'EMcv_biomod2_model,SpatRaster'
predict2(object, newdata, ...)

## S4 method for signature 'EMcv_biomod2_model,data.frame'
predict2(object, newdata, ...)

## S4 method for signature 'EMci_biomod2_model,SpatRaster'
predict2(object, newdata, ...)

## S4 method for signature 'EMci_biomod2_model,data.frame'
predict2(object, newdata, ...)

## S4 method for signature 'EMca_biomod2_model,SpatRaster'
predict2(object, newdata, data_as_formal_predictions = FALSE, ...)

## S4 method for signature 'EMca_biomod2_model,data.frame'
predict2(object, newdata, data_as_formal_predictions = FALSE, ...)

## S4 method for signature 'EMwmean_biomod2_model,SpatRaster'
predict2(object, newdata, data_as_formal_predictions = FALSE, ...)

## S4 method for signature 'EMwmean_biomod2_model,data.frame'
predict2(object, newdata, data_as_formal_predictions = FALSE, ...)

Arguments

object	a biomod2_ensemble_model object
newdata	a data.frame or SpatRaster object containing data for new predictions
predfun	a function, generated by the predict2 method specific to each biomod2_model subclass and used within the generic predict2.biomod2_model.SpatRaster or predict2.biomod2_model.data.frame to do the prediction
seedval	(optional, default NULL) An integer value corresponding to the new seed value to be set
data_as_formal_predictions	(optional, default FALSE). A boolean describing whether newdata is given as raw environmental data (FALSE) or as formal predictions of the individual models used to build the ensemble model (TRUE).
...	(optional)

Author(s)

Remi Patin

See Also

biomod2_ensemble_model

Other Toolbox functions: getters.bm, getters.out, load_stored_object(), predict.bm, predict.em, predict2.bm

biomodhub/biomod2 documentation built on April 30, 2024, 2:32 a.m.