predict2.bm: Functions to get predictions from 'biomod2_model' objects

In biomodhub/biomod2: Ensemble Platform for Species Distribution Modeling

Functions to get predictions from biomod2_model objects

Description

Internal S4 method used to predict single models from biomod2_model on (new) explanatory variables. predict2 was introduced to allow a signature with two arguments : object, a type of biomod2_model and newdata, either a SpatRaster or a data.frame.

Usage

predict2(object, newdata, ...)

## S4 method for signature 'biomod2_model,SpatRaster'
predict2(object, newdata, predfun, seedval = NULL, ...)

## S4 method for signature 'biomod2_model,data.frame'
predict2(object, newdata, predfun, seedval = NULL, ...)

## S4 method for signature 'ANN_biomod2_model,SpatRaster'
predict2(object, newdata, ...)

## S4 method for signature 'ANN_biomod2_model,data.frame'
predict2(object, newdata, ...)

## S4 method for signature 'CTA_biomod2_model,SpatRaster'
predict2(object, newdata, ...)

## S4 method for signature 'CTA_biomod2_model,data.frame'
predict2(object, newdata, ...)

## S4 method for signature 'DNN_biomod2_model,SpatRaster'
predict2(object, newdata, ...)

## S4 method for signature 'DNN_biomod2_model,data.frame'
predict2(object, newdata, ...)

## S4 method for signature 'FDA_biomod2_model,SpatRaster'
predict2(object, newdata, ...)

## S4 method for signature 'FDA_biomod2_model,data.frame'
predict2(object, newdata, ...)

## S4 method for signature 'GAM_biomod2_model,SpatRaster'
predict2(object, newdata, ...)

## S4 method for signature 'GAM_biomod2_model,data.frame'
predict2(object, newdata, ...)

## S4 method for signature 'GBM_biomod2_model,SpatRaster'
predict2(object, newdata, ...)

## S4 method for signature 'GBM_biomod2_model,data.frame'
predict2(object, newdata, ...)

## S4 method for signature 'GLM_biomod2_model,SpatRaster'
predict2(object, newdata, ...)

## S4 method for signature 'GLM_biomod2_model,data.frame'
predict2(object, newdata, ...)

## S4 method for signature 'MARS_biomod2_model,SpatRaster'
predict2(object, newdata, ...)

## S4 method for signature 'MARS_biomod2_model,data.frame'
predict2(object, newdata, ...)

## S4 method for signature 'MAXENT_biomod2_model,SpatRaster'
predict2(object, newdata, ...)

## S4 method for signature 'MAXENT_biomod2_model,data.frame'
predict2(object, newdata, ...)

## S4 method for signature 'MAXNET_biomod2_model,SpatRaster'
predict2(object, newdata, ...)

## S4 method for signature 'MAXNET_biomod2_model,data.frame'
predict2(object, newdata, ...)

## S4 method for signature 'RF_biomod2_model,SpatRaster'
predict2(object, newdata, ...)

## S4 method for signature 'RF_biomod2_model,data.frame'
predict2(object, newdata, ...)

## S4 method for signature 'RFd_biomod2_model,SpatRaster'
predict2(object, newdata, ...)

## S4 method for signature 'RFd_biomod2_model,data.frame'
predict2(object, newdata, ...)

## S4 method for signature 'SRE_biomod2_model,SpatRaster'
predict2(object, newdata, ...)

## S4 method for signature 'SRE_biomod2_model,data.frame'
predict2(object, newdata, ...)

## S4 method for signature 'XGBOOST_biomod2_model,SpatRaster'
predict2(object, newdata, ...)

## S4 method for signature 'XGBOOST_biomod2_model,data.frame'
predict2(object, newdata, ...)

Arguments

object	a biomod2_model object
newdata	a data.frame or SpatRaster object containing data for new predictions
predfun	a function, generated by the predict2 method specific to each biomod2_model subclass and used within the generic predict2.biomod2_model.SpatRaster or predict2.biomod2_model.data.frame to do the prediction
seedval	(optional, default NULL) An integer value corresponding to the new seed value to be set
...	(optional))

Author(s)

Remi Patin

See Also

biomod2_model

Other Toolbox functions: getters.bm, getters.out, load_stored_object(), predict.bm, predict.em, predict2.em, setters

biomodhub/biomod2 documentation built on July 4, 2025, 6:15 p.m.