bb_parseape: Parse a Genebank File and Construct an APE Object
In blaserlab/blaseRtools: R Tools for Blaser Lab Data Analysis
bb_parseape R Documentation
Parse a Genebank File and Construct an APE Object
Description
This is the main function for reading file in genebank/ape/equivalent format and generating an instance of the Ape class. String manipulations are used to parse the input ape file. Biostrings and GRanges functions are called to generate DNAStringSet and GRanges objects to store sequence and feature data, respectively. The Ape constructor function is called internally at the end.
Usage
bb_parseape(input_file)
Arguments
input_file
The genebank/ape file to parse and construct into an instance of the Ape class.
Value
An Ape object
blaserlab/blaseRtools documentation built on April 14, 2025, 6:04 p.m.
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| bb_parseape | R Documentation |
Parse a Genebank File and Construct an APE Object
Description
This is the main function for reading file in genebank/ape/equivalent format and generating an instance of the Ape class. String manipulations are used to parse the input ape file. Biostrings and GRanges functions are called to generate DNAStringSet and GRanges objects to store sequence and feature data, respectively. The Ape constructor function is called internally at the end.
Usage
bb_parseape(input_file)
Arguments
input_file |
The genebank/ape file to parse and construct into an instance of the Ape class. |
Value
An Ape object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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