bb_plot_rowData_col: A helper function to generate a data frame in the proper form...
In blaserlab/blaseRtools: R Tools for Blaser Lab Data Analysis
View source: R/bb_plot_rowData_col.R
bb_plot_rowData_col R Documentation
A helper function to generate a data frame in the proper form for aggregate expression plotting with bb_gene_umap.
Description
Use as argument for the "gene_or_genes" parameter for bb_gene_umap.
Usage
bb_plot_rowData_col(cds, rowData_col, filter_in = NULL, filter_out = NULL)
Arguments
cds
CDS from which to extract the gene metadata. Should be the same cds as the enclosing function.
rowData_col
Gene metadata column to aggregate by.
filter_in
Subset of values to focus on. Each will become a facet in the final plot. Default is to keep everything except NA values.
filter_out
Option to filter out any unwanted values. Default is to not filter out anything.
Value
A data frame in the format needed to pass into bb_gene_umap.
blaserlab/blaseRtools documentation built on April 14, 2025, 6:04 p.m.
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View source: R/bb_plot_rowData_col.R
| bb_plot_rowData_col | R Documentation |
A helper function to generate a data frame in the proper form for aggregate expression plotting with bb_gene_umap.
Description
Use as argument for the "gene_or_genes" parameter for bb_gene_umap.
Usage
bb_plot_rowData_col(cds, rowData_col, filter_in = NULL, filter_out = NULL)
Arguments
cds |
CDS from which to extract the gene metadata. Should be the same cds as the enclosing function. |
rowData_col |
Gene metadata column to aggregate by. |
filter_in |
Subset of values to focus on. Each will become a facet in the final plot. Default is to keep everything except NA values. |
filter_out |
Option to filter out any unwanted values. Default is to not filter out anything. |
Value
A data frame in the format needed to pass into bb_gene_umap.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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