bb_plot_trace_links: Plot The Link Data From A Trace Object
In blaserlab/blaseRtools: R Tools for Blaser Lab Data Analysis

bb_plot_trace_links

R Documentation

Plot The Link Data From A Trace Object

Description

A function to generate a link plot from tracklike genomic data. Links will automatically be trimmed to lie entirely within the plot range. An additional, optional score cutoff can be provided.

Usage

bb_plot_trace_links(
  trace,
  cutoff = 0,
  link_low_color = "grey80",
  link_high_color = "red3",
  link_range = c(0, 1)
)

Arguments

`trace`	A Trace object containing a valid links slot.
`cutoff`	Score cutoff for link plotting. Defaults to 0.
`link_low_color`	The color of a link with value of 0, default = grey80
`link_high_color`	The color of a link with value of 1, default = red3
`link_range`	The range of the color scale in terms of link values, default = c(0,1)