bb_plot_trace_model: Plot The Gene Model From A Trace Object

In blaserlab/blaseRtools: R Tools for Blaser Lab Data Analysis

Plot The Gene Model From A Trace Object

Description

A function to generate a plot of the underlying gene model. The genes to be plotted are automatically selected according to the genome build and the plot range. The function automatically picks the longest principle transcript to show. Optionally, alternative transcripts can be shown by specifying the select_transcript argument. This must be an ensembl transcript identifier lying within the plot range.

Usage

bb_plot_trace_model(
  trace,
  font_face = "italic",
  select_transcript = NULL,
  icon_fill = "cornsilk",
  debug = FALSE
)

Arguments

trace	A Trace object.
font_face	Font face option to use. Default = "italic".
select_transcript	Optional selected transcript(s) to plot.
icon_fill	The color to make the exon boxes.
debug	Boolean. Option to show the transcript ID on the final plot to confirm you have the right one. Default = FALSE.

blaserlab/blaseRtools documentation built on April 14, 2025, 6:04 p.m.