bb_promoter_overlap: Calculate The Overlap Between Peaks and Promoters

In blaserlab/blaseRtools: R Tools for Blaser Lab Data Analysis

Calculate The Overlap Between Peaks and Promoters

Description

For a given GRanges object containing peaks, determine how many peaks overlap promoters, how many promoters are overlapped by peaks and the significance of enrichment of query peaks relative to promoters.

Usage

bb_promoter_overlap(query, tss = c("hg38_tss", "dr11_tss"), width = 200)

Arguments

query	A GRanges object containing peaks
tss	The tss data base to use. Must be one of "hg38_tss" or "dr11_tss"
width	The width around the tss to evaluate. Defaults to 200 bp.

Value

A list including overlap information and binomal test results.

blaserlab/blaseRtools documentation built on April 14, 2025, 6:04 p.m.