AbundStatSummary: Function for auto-generate statistical summary of any...
In bmhoan/MMDR: Analysis of OTU and Functional 16S data
Description
Usage
Arguments
Examples
Description
Function for auto-generate statistical summary of any abudance table (OTU,GENE,KO...)
Usage
1
AbundStatSummary(abund.tab, sp.meta)
Arguments
abund.tab
as.matrix/as.data.frame: otu,ko, rownames=OTU/GENE/KO names, colnames=sample name
sp.meta
sample metadata as.matrix (ID,NICKNAME,CONDITION,SUBJECT,CATEGORY)
Examples
1
AbundStatSummary(OTUDATA$otu.tab,OTUDATA$sp.meta)
bmhoan/MMDR documentation built on July 4, 2019, 4:37 p.m.
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Description Usage Arguments Examples
Description
Function for auto-generate statistical summary of any abudance table (OTU,GENE,KO...)
Usage
1 | AbundStatSummary(abund.tab, sp.meta)
|
Arguments
abund.tab |
as.matrix/as.data.frame: otu,ko, rownames=OTU/GENE/KO names, colnames=sample name |
sp.meta |
sample metadata as.matrix (ID,NICKNAME,CONDITION,SUBJECT,CATEGORY) |
Examples
1 | AbundStatSummary(OTUDATA$otu.tab,OTUDATA$sp.meta)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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