AbundPlotHeatmap: Function to create a heatmap of abundance data...

In bmhoan/MMDR: Analysis of OTU and Functional 16S data

Description

Function to create a heatmap of abundance data (ROWs:OTU,GENE,KO, COLS: SAMPLE NAMES)

Usage

AbundPlotHeatmap(abund.tab, sp.meta, meanCountCutOff = 1,
  groups = "ALL", fontsize_row = 5, fontsize_col = 5)

Arguments

abund.tab	abundance table as.matrix
sp.meta	sample metadata as.matrix (ID,NICKNAME,CONDITION,SUBJECT,CATEGORY)
groups	list of biological condition(Healthy vs Disease)

Value

Heatmap plot

Examples

OtuPlotHeatmap(OTUDATA$otu.tab,OTUDATA$sp.meta, meanCountCutOff = 50, groups=c('protein','cholic'),fontsize_row=5,fontsize_col=5)

bmhoan/MMDR documentation built on July 4, 2019, 4:37 p.m.