richness_phyloseq: Function for get richness and count summary for each sampleid...
In bmhoan/MMDR: Analysis of OTU and Functional 16S data
Description
Usage
Arguments
Value
Examples
Description
Function for get richness and count summary for each sampleid using phyloseq
Usage
1
richness_phyloseq(abund.tab)
Arguments
abund.tab
Integer abundance table including only interger values (row names are OTU/KO/GENES)
Value
richness summary table
Examples
1
2
otu_richness=richness_phyloseq(OTUDATA$otu.tab)
ko_richness=richness_phyloseq(round(KODATA$ko.tab))
bmhoan/MMDR documentation built on July 4, 2019, 4:37 p.m.
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Description Usage Arguments Value Examples
Description
Function for get richness and count summary for each sampleid using phyloseq
Usage
1 | richness_phyloseq(abund.tab)
|
Arguments
abund.tab |
Integer abundance table including only interger values (row names are OTU/KO/GENES) |
Value
richness summary table
Examples
1 2 | otu_richness=richness_phyloseq(OTUDATA$otu.tab)
ko_richness=richness_phyloseq(round(KODATA$ko.tab))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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