API for bobverity/RMavericK
Analysis of population structure
| Global functions | |
|---|---|
| .onUnload | Source code |
| GTI_integrated_K_sim_cpp | Source code |
| GTI_posterior_K_sim_cpp | Source code |
| align_qmatrix | Source code |
| assert_2d | Source code |
| assert_NA | Source code |
| assert_atomic | Source code |
| assert_bounded | Source code |
| assert_class | Source code |
| assert_cluster | Source code |
| assert_cpp_int | Source code |
| assert_dataframe | Source code |
| assert_decreasing | Source code |
| assert_dim | Source code |
| assert_eq | Source code |
| assert_file_exists | Source code |
| assert_gr | Source code |
| assert_greq | Source code |
| assert_in | Source code |
| assert_increasing | Source code |
| assert_int | Source code |
| assert_le | Source code |
| assert_length | Source code |
| assert_leq | Source code |
| assert_limit | Source code |
| assert_list | Source code |
| assert_list_named | Source code |
| assert_logical | Source code |
| assert_matrix | Source code |
| assert_matrix_numeric | Source code |
| assert_mavproject | Source code |
| assert_named | Source code |
| assert_ncol | Source code |
| assert_neq | Source code |
| assert_noduplicates | Source code |
| assert_non_NA | Source code |
| assert_non_null | Source code |
| assert_not_in | Source code |
| assert_nrow | Source code |
| assert_null | Source code |
| assert_numeric | Source code |
| assert_pos | Source code |
| assert_pos_cpp_int | Source code |
| assert_pos_int | Source code |
| assert_same_length | Source code |
| assert_same_length_multiple | Source code |
| assert_single | Source code |
| assert_single_bounded | Source code |
| assert_single_cpp_int | Source code |
| assert_single_int | Source code |
| assert_single_logical | Source code |
| assert_single_numeric | Source code |
| assert_single_pos | Source code |
| assert_single_pos_cpp_int | Source code |
| assert_single_pos_int | Source code |
| assert_single_string | Source code |
| assert_square_matrix | Source code |
| assert_string | Source code |
| assert_symmetric_matrix | Source code |
| assert_vector | Source code |
| assert_vector_bounded | Source code |
| assert_vector_int | Source code |
| assert_vector_logical | Source code |
| assert_vector_numeric | Source code |
| assert_vector_pos | Source code |
| assert_vector_pos_int | Source code |
| assert_vector_string | Source code |
| bind_data | Man page Source code |
| call_hungarian | Source code |
| call_hungarian_cpp | Source code |
| change_set | Man page Source code |
| check_rmaverick_loaded | Man page Source code |
| default_colours | Source code |
| define_default | Source code |
| delete_set | Man page Source code |
| force_vector | Source code |
| get_GTI_logevidence_K | Source code |
| get_GTI_posterior | Source code |
| get_GTI_posterior_K | Source code |
| get_GTI_posterior_model | Source code |
| get_qmatrix | Man page Source code |
| geweke_pvalue | Source code |
| integrate_GTI_logevidence | Source code |
| integrate_GTI_logevidence_K | Source code |
| is.cluster | Source code |
| is.maverick_GTI_logevidence | Source code |
| is.maverick_GTI_logevidence_model | Source code |
| is.maverick_GTI_path | Source code |
| is.maverick_GTI_posterior | Source code |
| is.maverick_GTI_posterior_model | Source code |
| is.maverick_loglike_quantiles | Source code |
| is.maverick_qmatrix_ind | Source code |
| is.mavproject | Man page Source code |
| log_sum | Source code Source code |
| mat_to_rcpp | Source code |
| maverick_file | Man page Source code |
| mavproject | Man page Source code |
| new_set | Man page Source code |
| nice_format | Source code |
| plot.maverick_GTI_logevidence | Source code |
| plot.maverick_GTI_logevidence_model | Source code |
| plot.maverick_GTI_path | Source code |
| plot.maverick_GTI_posterior | Source code |
| plot.maverick_GTI_posterior_model | Source code |
| plot.maverick_loglike_quantiles | Source code |
| plot.maverick_qmatrix_ind | Source code |
| plot_GTI_path | Man page Source code |
| plot_acf | Man page Source code |
| plot_alpha | Man page Source code |
| plot_density | Man page Source code |
| plot_logevidence_K | Man page Source code |
| plot_logevidence_model | Man page Source code |
| plot_loglike | Man page Source code |
| plot_loglike_quantiles | Man page Source code |
| plot_mc_acceptance | Man page Source code |
| plot_posterior_K | Man page Source code |
| plot_posterior_model | Man page Source code |
| plot_qmatrix | Man page Source code |
| plot_trace | Man page Source code |
| print.maverick_GTI_logevidence | Source code |
| print.maverick_GTI_logevidence_model | Source code |
| print.maverick_GTI_path | Source code |
| print.maverick_GTI_posterior | Source code |
| print.maverick_GTI_posterior_model | Source code |
| print.maverick_loglike_quantiles | Source code |
| print.maverick_qmatrix_ind | Source code |
| print.mavproject | Man page Source code |
| print_full | Man page Source code |
| process_data | Source code |
| process_data_long | Source code |
| process_data_wide | Source code |
| quantile_95 | Source code |
| rcpp_to_mat | Source code |
| rdirichlet | Source code |
| recalculate_evidence | Man page Source code |
| rmaverick | Man page |
| run_mcmc | Man page Source code |
| run_mcmc_cpp | Source code |
| sim_data | Man page Source code |
| summary.mavproject | Man page Source code |
| test_convergence | Source code |
| theme_empty | Source code |
| update_progress | Source code |
| user_yes_no | Source code |
