Man pages for bobverity/RMavericK
Analysis of population structure
| bind_data | Bind data to project |
| change_set | Change active parameter set |
| check_rmaverick_loaded | Check that rmaverick package has loaded successfully |
| delete_set | Delete parameter set |
| get_qmatrix | Extract q-matrix for a given analysis |
| is.mavproject | Determine if object is of class mavproject |
| maverick_file | Import file |
| mavproject | Create a new rmaverick project |
| new_set | Create new parameter set |
| plot_acf | Produce MCMC autocorrelation plot |
| plot_alpha | Produce diagnostic plots of parameter alpha |
| plot_density | Produce MCMC density plot |
| plot_GTI_path | Plot GTI path of current active set |
| plot_logevidence_K | Plot log-evidence estimates over K |
| plot_logevidence_model | Plot log-evidence estimates over parameter sets |
| plot_loglike | Produce diagnostic plots of log-likelihood |
| plot_loglike_quantiles | Plot loglike quantiles of current active set |
| plot_mc_acceptance | Plot Metropolis coupling acceptance rates |
| plot_posterior_K | Plot posterior K |
| plot_posterior_model | Plot posterior model |
| plot_qmatrix | Plot Q-matrix of current active set |
| plot_trace | Produce MCMC trace plot |
| print_full | Ordinary print function for class mavproject |
| print.mavproject | Custom print function for class mavproject |
| recalculate_evidence | Recalculate evidence and posterior estimates |
| rmaverick | Analysis of genetic population structure via thermodynamic... |
| run_mcmc | Run main MCMC |
| sim_data | Simulate data |
| summary.mavproject | Print summary for class mavproject |
