sim_data: Simulate data

Description Usage Arguments

Description

Simulate data from the same model(s) used in the rmaverick inference step. Data can be generated from models with or without admixture.

Usage

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sim_data(n = 10, ploidy = 2, loci = 10, allele_num = 5,
  lambda = 1, admix_on = FALSE, alpha = 1, K = 3,
  pop_col_on = TRUE, ploidy_col_on = TRUE)

Arguments

n

number of samples

ploidy

ploidy of every sample. If scalar then the same value applies to all samples

loci

number of loci

allele_num

number of alleles per locus

lambda

prior parameter on allele frequency distribution

admix_on

whether to simulate from the admixture model

alpha

the admixture parameter

K

the number of subpopulations

pop_col_on

whether to simulate data with a population column

ploidy_col_on

whether to simulate data with a ploidy column


bobverity/RMavericK documentation built on May 12, 2019, 11:28 p.m.