rmaverick: Analysis of genetic population structure via thermodynamic...
In bobverity/RMavericK: Analysis of population structure
Description
Mixture models provide a powerful way of teasing apart
population structure from genetic data, as exemplified by the program
STRUCTURE. However, choosing the number of sub-populations (denoted K) is a
more difficult problem as this requires evaluation of the *evidence* of
each model. In contrast to other programs, *rmaverick* uses thermodynamic
integration to arrive at precise and accurate estimates of the evidence for
each *K*, allowing the user to choose appropriate values of this parameter,
and also to compare between different evolutionary models (e.g.
with/without admixture).
bobverity/RMavericK documentation built on Jan. 16, 2022, 4:49 a.m.
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Description
Mixture models provide a powerful way of teasing apart population structure from genetic data, as exemplified by the program STRUCTURE. However, choosing the number of sub-populations (denoted K) is a more difficult problem as this requires evaluation of the *evidence* of each model. In contrast to other programs, *rmaverick* uses thermodynamic integration to arrive at precise and accurate estimates of the evidence for each *K*, allowing the user to choose appropriate values of this parameter, and also to compare between different evolutionary models (e.g. with/without admixture).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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