Man pages for bofei5675/RaMP2
RaMP (Relational Database of Metabolomic Pathways)
| connectToRaMP | Connect to RaMP database (requires mysql password when... |
| killDbConnections | Kill all databases connection. |
| rampCataOut | The function send query to databases to find synonym |
| rampFastMetaFromPath | Use fast search algorithm to find all pathways from given... |
| rampFastMulCata | Return analytes that has catalyzation relation with given... |
| rampFastOneCata | Return analytes that has catalyzation relation with given... |
| rampFastPathFromMeta | PathFromMetast search given a list of metabolites |
| rampFastPathFromSource | Fast search given a list of metabolites source Id |
| rampFileOfAnalytes_tab4 | Generate data.frame from given files |
| rampFileOfPathways | Generate data.frame from given files |
| rampFileOfPathways_tab2 | Generate data.frame that has all search results from given... |
| rampFindSourceFromId | Find all source from given list of RaMP Ids |
| rampFindSourceRampId | Find rampId from given source ID The rampId can be plugged in... |
| rampFindSynonymFromSynonym | Find all synonym from a given metabolite's name This function... |
| rampGenerateBarPlot | Reformat the result of query (get pathways from analyte(s))... |
| rampGenesFromComp | Send query to databases to get metabolites |
| rampHcOutput | highchart output for RaMP and fisher test. |
| rampImportDumpFile | Import RaMP database automatically from dump file that is... |
| rampKWsearch | The function does key word search from given synonym on... |
| rampNameFromPath | Send query to databases to get metabolites |
| rampOntoOut | The function send query to databases to find ontology or... |
| rampPathFromMeta | Send query to database that find pathway |
| rampTablize | Generate HTML table output from given data frame |
| runFisherTest | Do fisher test for only one pathway from search result... |
| runRaMPapp | Run Shiny App |
