rampGenesFromComp: Send query to databases to get metabolites

In bofei5675/RaMP2: RaMP (Relational Database of Metabolomic Pathways)

Description

From user supplied synonym metabolites, it search through whole databases , and returns all metabolites which are in the same pathways.

Usage

rampGenesFromComp(names, maxItems, geneOrcompound = NULL, conpass = NULL,
  dbname = "ramp", username = "root")

Arguments

names	the string that user defined for given synonym of metablite
maxItems	the integer given from slider bar to limit maximum elements returned by query
geneOrcompound	string defined from radio input that describes type of returned metablites from query.
conpass	password for database access (string)
dbname	name of the mysql database (default is "ramp")
username	username for database access (default is "root")

Value

a dataframe that contain given synonym as column name

Examples

## Not run: 
ramp <- rampGenesFromComp("VitamineE",20,"compound",conpass="mysqlpassword")

## End(Not run)

bofei5675/RaMP2 documentation built on May 20, 2019, 8:48 a.m.