rampCataOut: The function send query to databases to find synonym

In bofei5675/RaMP2: RaMP (Relational Database of Metabolomic Pathways)

Description

based on catalyzation relationship. This function also automate identification about if the given metabolites is gene or compound

Usage

rampCataOut(synonym, maxItems = 1000, conpass, dbname = "ramp",
  username = "root")

Arguments

synonym	string value that describe synonym of metabolites
maxItems	Integer value that describe maximum returned by query
conpass	password for database access (string)
dbname	name of the mysql database (default is "ramp")
username	username for database access (default is "root")

Value

a dataframe that has all searching result with given synonym as column name. If synonym is compound, it returns all gene that catalyze that compound. If synonym is gene, it returns all compound catalyzed by this gene.

bofei5675/RaMP2 documentation built on May 20, 2019, 8:48 a.m.