rampFastPathFromMeta: PathFromMetast search given a list of metabolites

In bofei5675/RaMP2: RaMP (Relational Database of Metabolomic Pathways)

Description

PathFromMetast search given a list of metabolites

Usage

rampFastPathFromMeta(analytes, find_synonym = FALSE, conpass = NULL,
  dbname = "ramp", username = "root", NameOrIds = "ids")

Arguments

analytes	a vector of analytes (genes or metabolites) that need to be searched
find_synonym	find all synonyms or just return same synonym (T/F)
conpass	password for database access (string)
dbname	name of the mysql database (default is "ramp")
username	username for database access (default is "root")
NameOrIds	whether input is "names" or "ids" (default is "ids")

Value

a list contains all metabolits as name and pathway inside.

bofei5675/RaMP2 documentation built on May 20, 2019, 8:48 a.m.