rampNameFromPath: Send query to databases to get metabolites

In bofei5675/RaMP2: RaMP (Relational Database of Metabolomic Pathways)

Description

From given pathway name, it searches through whole databases to find all metabolites in that pathway.

Usage

rampNameFromPath(names, maxItems, geneOrCompound, conpass, dbname = "ramp",
  username = "root")

Arguments

names	the string value that describes pathway name.
maxItems	the integer value given to define maximum items return by this query.
geneOrCompound	the string value that define types (gene or compound) of returned metabolites.
conpass	password for database access (string)
dbname	name of the mysql database (default is "ramp")
username	username for database access (default is "root")

Value

a dataframe that has given pathwayname as column names

Examples

## Not run: 
ramp <- rampNameFromPath("Glucose-Alanine Cycle",20,compound,conpass="mysqlpassword")

## End(Not run)

bofei5675/RaMP2 documentation built on May 20, 2019, 8:48 a.m.