rampPathFromMeta: Send query to database that find pathway
In bofei5675/RaMP2: RaMP (Relational Database of Metabolomic Pathways)
Description
Usage
Arguments
Value
Description
From given metabolite's synonym, it search through all databases to find
all pathways that have the metabolite.
Usage
1
2
rampPathFromMeta(synonym, maxItems, conpass, dbname = "ramp",
username = "root")
Arguments
synonym
the string that describe given synonym name.
maxItems
the integer that limit maximum returned by
conpass
password for database access (string)
dbname
name of the mysql database (default is "ramp")
username
username for database access (default is "root")
query
Value
a dataframe that has given synonym as column name
bofei5675/RaMP2 documentation built on May 20, 2019, 8:48 a.m.
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Description Usage Arguments Value
Description
From given metabolite's synonym, it search through all databases to find all pathways that have the metabolite.
Usage
1 2 | rampPathFromMeta(synonym, maxItems, conpass, dbname = "ramp",
username = "root")
|
Arguments
synonym |
the string that describe given synonym name. |
maxItems |
the integer that limit maximum returned by |
conpass |
password for database access (string) |
dbname |
name of the mysql database (default is "ramp") |
username |
username for database access (default is "root") query |
Value
a dataframe that has given synonym as column name
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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