connectToRaMP | Connect to RaMP database (requires mysql password when... |
killDbConnections | Kill all databases connection. |
rampCataOut | The function send query to databases to find synonym |
rampFastMetaFromPath | Use fast search algorithm to find all pathways from given... |
rampFastMulCata | Return analytes that has catalyzation relation with given... |
rampFastOneCata | Return analytes that has catalyzation relation with given... |
rampFastPathFromMeta | PathFromMetast search given a list of metabolites |
rampFastPathFromSource | Fast search given a list of metabolites source Id |
rampFileOfAnalytes_tab4 | Generate data.frame from given files |
rampFileOfPathways | Generate data.frame from given files |
rampFileOfPathways_tab2 | Generate data.frame that has all search results from given... |
rampFindSourceFromId | Find all source from given list of RaMP Ids |
rampFindSourceRampId | Find rampId from given source ID The rampId can be plugged in... |
rampFindSynonymFromSynonym | Find all synonym from a given metabolite's name This function... |
rampGenerateBarPlot | Reformat the result of query (get pathways from analyte(s))... |
rampGenesFromComp | Send query to databases to get metabolites |
rampHcOutput | highchart output for RaMP and fisher test. |
rampImportDumpFile | Import RaMP database automatically from dump file that is... |
rampKWsearch | The function does key word search from given synonym on... |
rampNameFromPath | Send query to databases to get metabolites |
rampOntoOut | The function send query to databases to find ontology or... |
rampPathFromMeta | Send query to database that find pathway |
rampTablize | Generate HTML table output from given data frame |
runFisherTest | Do fisher test for only one pathway from search result... |
runRaMPapp | Run Shiny App |
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