calc_aqg_modes: Calculate Aquagram - Modes

In bpollner/aquap2: Multivariate Data Analysis Tools for R including Aquaphotomics Methods

Calculate Aquagram - Modes

Description

The following values can be provided to the argument aqg.mod in getap, specifiying what type of Aquagram should be calculated.

Details

XXX

Possible Values

Possible Aquagram modes are

• classic: The classical aquagram - smoothed, MSC, normalized

• classic-diff: same as above + one group subtracted from all the others.

• sfc: "Scaled, foreign center": smoothed, MSC, centered on the mean of selected calibration data, scaled.

• sfc-diff: same as above + one group subtracted from all the others.

• aucs: "Area Under Curve Stabilized": the area under the curve (auc) from the spectra in all the 12/15 coordinates in a set of calibration data at varying temperature is calculated, then divided by the total auc. Then the smalles and biggest value is taken as 0 calculated for every sample, and its value in percent ... XXX

• aucs-diff: same as above + one group subtracted from all the others.

• aucs.tn: aucs + temperature normalization: .... XXX the auc from a sample at Texp gets subtracted from all the auc of the samples.

• aucs.tn-diff: same as above + one group subtracted from all the others

• aucs.tn.dce: same as aucs.tn, but the scale calculated to show degrees celsius equivalent

• aucs.tn.dce-diff: same as above + one group subtracted from all the others

• aucs.dce: same as aucs, but the scale calculated to show degrees celsius equivalent

• aucs.dce-diff: same as above + one group subtracted from all the others

References

XXX the Aquagram paper XXX

See Also

calc_aqg_args, for recording your own temperature calibration spectra: genTempCalibExp

bpollner/aquap2 documentation built on March 29, 2024, 7:33 a.m.