calc_sim_args: Calculate SIMCA - Arguments

In bpollner/aquap2: Multivariate Data Analysis Tools for R including Aquaphotomics Methods

Calculate SIMCA - Arguments

Description

The following parameters can be used in the ... argument in function getap, also within function gdmm, to override the values in the analysis procedure file and so to modify the calculation of SIMCA models - see examples.

getap(...)

gdmm(dataset, ap=getap(...))

Arguments

do.sim	Logical. If used in getap, if SIMCA models of the dataset should be calculated.
sim.vars	NULL or character vector. Which variables should be used to group the data. Set to NULL for using all available class-variables, or provide a character vector with the column names of class variables to group the data along those for calculating SIMCA models.
sim.K	Numeric length one. The number of components used for calculating the SIMCA models. In mode 'robust' leave at '0' for automatic detection of optimal number of components. [It is a capital 'K' in the argument.]

Details

For a list of all parameters that can be used in the ... argument in getap and in the plot functions please see anproc_file.

Note

Calculation of SIMCA models is done with the function RSimca / CSimca and with code adapted from the manual-page of the Chemometrics-software "Pirouette".

See Also

gdmm

Other Calc. arguments: calc_NNET_args, calc_SVM_args, calc_aqg_args, calc_discrimAnalysis_args, calc_pca_args, calc_pls_args, calc_randomForest_args, split_dataset

Other SIMCA documentation: plot_sim_args, plot_simca,aquap_cube-method

Examples

## Not run: 
 dataset <- gfd()
 cube <- gdmm(dataset, getap(do.sim=TRUE))
 cube <- gdmm(dataset, getap(do.sim=TRUE, sim.K=4))

## End(Not run)

bpollner/aquap2 documentation built on June 29, 2024, 5:21 p.m.