Files in bpollner/aquap2
Multivariate Data Analysis Tools for R including Aquaphotomics Methods
.Rbuildignore
.github/.gitignore
.github/workflows/jekyll-gh-pages.yml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/aquap2_PACKAGE.R
R/calc_aqg.r
R/calc_classif_gen.r
R/calc_noise.r
R/calc_plsr.r
R/calc_simca.r
R/cl_classDefs.r
R/cl_classFunctions.r
R/crw_cp.R
R/cube_generateDatasets.r
R/cube_makeModels.r
R/doc_anproc.r
R/doc_classes.r
R/doc_classification.r
R/doc_customImport.r
R/doc_customTRH.r
R/doc_dptModules.r
R/doc_metadata.r
R/doc_methods.r
R/doc_settings.r
R/gen_coreDataManip.r
R/gen_general.r
R/gen_mdApVerCheck.R
R/gen_parallel.r
R/gen_possibleValues.r
R/gen_roxygenHelpers.r
R/mod_modifyDatasets.r
R/peaks_pick+plot.r
R/plot_all.r
R/plot_aqg.r
R/plot_classif_gen.r
R/plot_classif_spec.r
R/plot_pca.r
R/plot_plsr.r
R/plot_simca.r
R/plot_spectra.r
R/prep_SampleList.r
R/prep_importData.r
R/prep_importData_specific.r
R/prep_interpolate.r
R/prep_metadata.r
R/prep_transformToAp2.r
R/prep_transition.R
R/prep_writeMfiles.r
R/uniset_functions.R
R/uniset_globals.R
R/zzz.r
README.md
README2.md
_config.yml
_pkgdown.yml
codecov.yml
index.md
inst/CITATION
inst/aquap2_settings.r
inst/examples/readmes/readme_R-code.txt
inst/examples/readmes/readme_R-data.txt
inst/examples/readmes/readme_exports.txt
inst/examples/readmes/readme_metadata.txt
inst/examples/readmes/readme_rawdata.txt
inst/examples/readmes/readme_results.txt
inst/examples/readmes/readme_sl_in.txt
inst/examples/readmes/readme_sl_out.txt
inst/pData/aqugrStngs
inst/templates/anProc.r
inst/templates/metadata.r
inst/templates/sl_classes.xlsx
inst/testHelpers/aquap2SH/importFromFormatX.R
inst/testHelpers/metadata/md0/md_ad_1.R
inst/testHelpers/metadata/md0/md_ad_2.R
inst/testHelpers/metadata/md0/md_ad_3.R
inst/testHelpers/metadata/md0/md_ad_4.R
inst/testHelpers/metadata/md0/md_del_1.R
inst/testHelpers/metadata/md0/md_del_2.R
inst/testHelpers/metadata/md0/md_del_3.R
inst/testHelpers/metadata/md0/md_del_ad_1.R
inst/testHelpers/metadata/md0/md_del_ad_2.R
inst/testHelpers/metadata/md0/md_err_1.R
inst/testHelpers/metadata/md0/md_err_2.R
inst/testHelpers/metadata/md0/mdx.xlsx
inst/testHelpers/metadata/md1/md_KCl.r
inst/testHelpers/metadata/md1/md_KCl.xlsx
inst/testHelpers/metadata/md1/md_a_0err.r
inst/testHelpers/metadata/md1/md_a_0err.xlsx
inst/testHelpers/metadata/md1/md_a_1.r
inst/testHelpers/metadata/md1/md_a_1.xlsx
inst/testHelpers/metadata/md1/md_a_1err.r
inst/testHelpers/metadata/md1/md_a_2.r
inst/testHelpers/metadata/md1/md_a_2.xlsx
inst/testHelpers/metadata/md1/md_a_3.r
inst/testHelpers/metadata/md1/md_a_3.xlsx
inst/testHelpers/metadata/md1/md_b_1.r
inst/testHelpers/metadata/md1/md_b_1.xlsx
inst/testHelpers/metadata/md1/md_b_2.r
inst/testHelpers/metadata/md1/md_b_2.xlsx
inst/testHelpers/metadata/md1/md_b_3.r
inst/testHelpers/metadata/md1/md_b_3.xlsx
inst/testHelpers/metadata/md1/md_c_1.r
inst/testHelpers/metadata/md1/md_c_1.xlsx
inst/testHelpers/metadata/md1/md_c_3.r
inst/testHelpers/metadata/md1/md_c_3.xlsx
inst/testHelpers/metadata/md1/md_d_1.r
inst/testHelpers/metadata/md1/md_d_1.xlsx
inst/testHelpers/metadata/md1/md_d_2.r
inst/testHelpers/metadata/md1/md_d_2.xlsx
inst/testHelpers/metadata/md1/metadata.R
inst/testHelpers/metadata/md1/sl_classes.xlsx
inst/testHelpers/metadata/md2ap/ap_add_1.r
inst/testHelpers/metadata/md2ap/ap_add_2.r
inst/testHelpers/metadata/md2ap/ap_del_1.r
inst/testHelpers/metadata/md2ap/ap_del_2.r
inst/testHelpers/metadata/md2ap/ap_del_add_1.r
inst/testHelpers/metadata/md2ap/ap_del_add_2.r
inst/testHelpers/sl_in/LBWB-in.xlsx
inst/testHelpers/sl_in/xsComp-in-bothCols.xlsx
inst/testHelpers/sl_in/xsComp-in.xlsx
man-roxygen/mr_apsExplanation.r
man-roxygen/mr_aqg_calc_param.r
man-roxygen/mr_aqg_plot_param.r
man-roxygen/mr_classif_NNET_calc_param.r
man-roxygen/mr_classif_NNET_plot_param.r
man-roxygen/mr_classif_RNF_calc_param.r
man-roxygen/mr_classif_RNF_plot_param.r
man-roxygen/mr_classif_SVM_calc_param.r
man-roxygen/mr_classif_SVM_plot_param.r
man-roxygen/mr_classif_XDA_calc_param.r
man-roxygen/mr_classif_XDA_plot_param.r
man-roxygen/mr_details_allParams.r
man-roxygen/mr_doc_dptModules.r
man-roxygen/mr_getCubeModel.r
man-roxygen/mr_getFullData.r
man-roxygen/mr_noiseModes.r
man-roxygen/mr_pca_calc_param.r
man-roxygen/mr_pca_plot_param.r
man-roxygen/mr_pg_genParams.r
man-roxygen/mr_pls_calc_param.r
man-roxygen/mr_pls_plot_param.r
man-roxygen/mr_sim_calc_param.r
man-roxygen/mr_sim_plot_param.r
man-roxygen/mr_spl_split_param.r
man-roxygen/mr_variables.r
man-roxygen/mr_whatPlotSubtypes.r
man/Extract_Elements.Rd
man/adLinesToVector.Rd
man/anproc_file.Rd
man/ap2_settings_setup.Rd
man/ap2dme.Rd
man/aquap2.Rd
man/aquap2_handover_to_uniset.Rd
man/aquap_cpt.Rd
man/aquap_cube.Rd
man/aquap_data-methods.Rd
man/aquap_set.Rd
man/calc_NNET_args.Rd
man/calc_SVM_args.Rd
man/calc_aqg_args.Rd
man/calc_aqg_modes.Rd
man/calc_discrimAnalysis_args.Rd
man/calc_pca_args.Rd
man/calc_pls_args.Rd
man/calc_randomForest_args.Rd
man/calc_sim_args.Rd
man/calculateVariable.Rd
man/classification_helpers.Rd
man/combineVariable.Rd
man/custom_TRH.Rd
man/custom_import.Rd
man/do_addNoise.Rd
man/do_avg.Rd
man/do_blowup.Rd
man/do_detrend.Rd
man/do_dptSeq.Rd
man/do_emsc.Rd
man/do_gapDer.Rd
man/do_msc.Rd
man/do_resampleNIR.Rd
man/do_sgolay.Rd
man/do_snv.Rd
man/dpt_modules.Rd
man/exportSampleList.Rd
man/export_ap2_ToXlsx.Rd
man/export_header_toXls.Rd
man/gdmm.Rd
man/genFolderStr.Rd
man/genNoiseRecExp.Rd
man/genTempCalibExp.Rd
man/generateMergeLabels.Rd
man/getFullData.Rd
man/getWavelengths.Rd
man/getap.Rd
man/getcd.Rd
man/getcm.Rd
man/getmd.Rd
man/getstn.Rd
man/imp_searchAskColumns.Rd
man/importExport_raw_toXls.Rd
man/mergeDatasets.Rd
man/metadata_file.Rd
man/noise_procedures.Rd
man/plot_DA.Rd
man/plot_NNET.Rd
man/plot_NNET_args.Rd
man/plot_RNF.Rd
man/plot_SVM.Rd
man/plot_SVM_args.Rd
man/plot_all_modells.Rd
man/plot_aqg.Rd
man/plot_aqg_args.Rd
man/plot_classifX_indepPred.Rd
man/plot_discrimAnalysis_args.Rd
man/plot_pca.Rd
man/plot_pca_args.Rd
man/plot_pg_args.Rd
man/plot_pls.Rd
man/plot_pls_args.Rd
man/plot_pls_indepPred.Rd
man/plot_randomForest_args.Rd
man/plot_sim_args.Rd
man/plot_simca.Rd
man/plot_spectra.Rd
man/pls_outlier_getIndices.Rd
man/printStdColnames.Rd
man/reColor.Rd
man/readHeader.Rd
man/readSpectra.Rd
man/sampleList_multiplyRows.Rd
man/saveAQdata.Rd
man/selectWls.Rd
man/settings_file.Rd
man/siWl.Rd
man/siWlg.Rd
man/split_dataset.Rd
man/ssc.Rd
man/tempCalib_procedures.Rd
man/testUniset.Rd
man/ttap.Rd
man/updateSettings.Rd
tests/testthat.R
tests/testthat/test_0001_setup_genfs.R
tests/testthat/test_0005_helpers.R
tests/testthat/test_0010_prep_importData.R
tests/testthat/test_0050_gen_general.R
tests/testthat/test_0100_gen_parallel.R
vignettes/aquap2.R
vignettes/aquap2.Rmd
vignettes/basicWorkflow.R
vignettes/basicWorkflow.Rmd
vignettes/contLayers.R
vignettes/contLayers.Rmd
vignettes/courses.R
vignettes/courses.Rmd
vignettes/dataImport.R
vignettes/dataImport.Rmd
vignettes/dataObjects.R
vignettes/dataObjects.Rmd
vignettes/eBook.R
vignettes/eBook.Rmd
vignettes/environCond.R
vignettes/environCond.Rmd
vignettes/expDesign.R
vignettes/expDesign.Rmd
vignettes/recordSpectra.R
vignettes/recordSpectra.Rmd
