plot_pls_args: Plot PLSR - Arguments

In bpollner/aquap2: Multivariate Data Analysis Tools for R including Aquaphotomics Methods

Plot PLSR - Arguments

Description

The following parameters can be used in the ... argument e.g. in function plot and plot_pls to override the values in the analysis procedure file and so to modify the graphics - see examples.

plot(cube, ...)

plot_pls(cube, ...)

Arguments

do.pls	Logical. If used in a plotting function, if analysis from PLSR models should be plotted.
pls.colorBy	NULL or character. What class-variable should be used for coloring in the RMSEC and RMSECV plots. Set to NULL for no coloring, or provide a character length one with a single column name of a class variable that should be used for coloring.
pls.what	What types of plsr analysis to plot. Possible values are 'both', 'errors', 'regression'.
pls.rdp	Logical (TRUE or FALSE). If errors in the error plots should be given in RDP or not.
pg.where	Character length one. If left at the default 'def', the value from the settings.r file is read in (parameter gen_plot_pgWhereDefault). For plotting to PDFs provide "pdf", for plotting to graphics device provide anything but "pdf".
pg.main	Character length one. The additional text on the title of each single plot.
pg.sub	Character length one. The additional text on the subtitle of each single plot.
pg.fns	Character length one. The additional text in the filename of the pdf.

Details

For a list of all parameters that can be used in the ... argument in getap and in the plot functions please see anproc_file.

See Also

plot_pls

Other Plot arguments: plot,aquap_data,missing-method, plot_NNET_args, plot_SVM_args, plot_aqg_args, plot_discrimAnalysis_args, plot_pca_args, plot_pg_args, plot_randomForest_args, plot_sim_args

Other PLSR documentation: calc_pls_args, plot_pls,aquap_cube-method, plot_pls_indepPred()

Examples

## Not run: 
dataset <- gfd()
cube <- gdmm(dataset)
plot(cube, do.pls=FALSE) # to plot everything availalbe except the plsr-models
plot(cube, pls.colorBy="C_Temp")
plot_pls(cube, pls.colorBy="C_Temp")

## End(Not run)

bpollner/aquap2 documentation built on June 29, 2024, 5:21 p.m.