genTempCalibExp | R Documentation |
Generate the folder structure for a new experiment and populate
it with the metadata suggested for recording then the temperature
calibration-spectra used e.g. in the aquagram (see argument aqg.TCalib
and aqg.Texp
in calc_aqg_args
).
genTempCalibExp(Tcenter = NULL, Tdelta = 5, stepBy = 1, repls = 4)
Tcenter |
Numeric length one. The temperature at which usually the measurements are performed. The final temperature will range from Tcenter-Tdelta to Tcenter+Tdelta, in steps given by argument 'stepsBy'. |
Tdelta |
Numeric length one, defaults to 5. The temperature range below and above 'Tcenter'. |
stepBy |
Numeric length one, defaults to 1. The temperature step between each single temperature in the range from Tcenter-Tdelta to Tcenter+Tdelta. |
repls |
Numeric length one. How many replicates of each single temperature to record. Defaults to 4. |
This generates the folder structure for a standard experiment and is adapting the metadata to record spectra at various temperatures in each 3 consecutive scans. For a possible workflow please see examples.
When exporting the sample list via esl
, make
sure to export it non randomized - please see examples.
Do not change the name of the columns in the sample list
before importing the dataset; if the numerical column smpTemp
is not
present, the temperature calibration data can not be used.
tempCalib_procedures
, genFolderStr
,
genNoiseRecExp
Other Temperature procedures:
tempCalib_procedures
Other Helper Functions:
ap2_settings_setup()
,
ap2dme()
,
export_ap2_ToXlsx()
,
export_header_toXls()
,
genFolderStr()
,
genNoiseRecExp()
,
getcd()
,
getcm()
,
getstn()
,
printStdColnames()
,
reColor()
,
saveAQdata()
,
siWlg()
,
updateSettings()
## Not run:
genTempCalibExp(Tcenter=30) # generate the folder structure in the current
working directory
esl(rnd=FALSE) # export a *non* randomized sample list
#### now record the temperature-spectra #### (move sample list to folder 'sl_in')
gfd <- gfd() # imports temperature raw-data and saves an R-data file in the
# R-data folder, from where you take it and move it into your
# AQUAP2SH folder
## End(Not run)
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.