plot_aqg_args | R Documentation |
The following parameters can be used in the ...
argument in
function plot
and plot_aqg
to override the values
in the analysis procedure file and so to modify the graphics - see examples.
plot(cube, ...)
plot_aqg(cube, ...)
do.aqg |
Logical. If used in a plotting function, if Aquagrams should be plotted. |
aqg.fsa |
'Fix scale for Aquagram'. Logical, numeric or Character. If left at the default logical FALSE, every single aquagram will be plotted in its own, independent scale. If a numeric vector length two is provided, all the aquagrams to be plotted (normal AND bootstrapped ones) will be in the provided range, no independently scaled aquagrams will be plotted. If character, the following values are possible:
|
aqg.fss |
'Fix scale for subtraction spectra'. Logical, numeric or character. If left at the default logical FALSE', every single subtraction-spectra plot will be plotted in its own, independendent scale. If a numeric vector length two is provided, all the subtraction-spectra to be plotted (if 'plotSpectra' contains 'subtr', and 'minus' contains a valid value) will be in the provided range, no independently scaled subtraction-spectra will be plotted. If character, the following values are possible:
|
aqg.ccol |
Custom Color - NULL, Numeric or Character vector. Custom colors for drawing the lines in the aquagram. Length must exactly match the number of groups to be plotted in the aquagram. If not, the default coloring from the dataset is used. This can be used when plotting aquagrams with different numbers of groups: only this group that matches the number of provided custom colors is colored differently. Especially useful when you have more than 8 lines to be plotted – custom-color similar groups in similar colors. |
aqg.clt |
Character or Integer vector. Custom line type for plotting the lines in the Aquagram. If left at the default 'def', the vector provided in the settings.r file is taken (and recycled). If an integer vector is provided, this is used (and recycled) as line-types in the Aquagram. |
aqg.pplot |
Logical or character 'def'. If, should spectra be plotted, an additional plot with picked peaks should be added. If left at the default value 'def', the default from the settings.r file is used. |
aqg.plines |
Logical, numeric or character 'def'. If set to |
aqg.discr |
Logical or character 'def'. If set to TRUE, negative (resp. positive) peaks can be only found in peak-heights below (resp. above) zero. |
pg.where |
Character length one. If left at the default 'def', the value
from the settings.r file is read in (parameter |
pg.main |
Character length one. The additional text on the title of each single plot. |
pg.sub |
Character length one. The additional text on the subtitle of each single plot. |
pg.fns |
Character length one. The additional text in the filename of the pdf. |
For a list of all parameters that can be used in the ...
argument in getap
and in the plot
functions
please see anproc_file
.
plot_aqg
Other Plot arguments:
plot,aquap_data,missing-method
,
plot_NNET_args
,
plot_SVM_args
,
plot_discrimAnalysis_args
,
plot_pca_args
,
plot_pg_args
,
plot_pls_args
,
plot_randomForest_args
,
plot_sim_args
Other Aquagram documentation:
calc_aqg_args
,
plot_aqg()
,
tempCalib_procedures
## Not run:
dataset <- gfd()
cube <- gdmm(dataset)
plot(cube)
## End(Not run)
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