Man pages for brendanf/tzara
Cluster long amplicons using dada2 denoising on variable regions
| add_derep_names | Add sequence names to a derep object |
| cluster_consensus | Calculate consensus of a cluster of sequences. |
| combine_bigmaps | Combine raw and denoised reads from multiple regions of the... |
| combine_derep | Combine DADA2 'derep' objects into master map |
| dadamap | Produce a map between denoised sequences and their original... |
| extract_region | Extract regions from a set of sequences (maybe with... |
| find_all_region_chimeras | Find chimeras in adjacent variable-conserved-variable domain... |
| find_region_chimeras | Check for bimeras in a subset of regions |
| has_alphabet | Test if all characters in a character vector are members of... |
| map_or_consensus | Assign consensus sequences to unmapped reads |
| map_to_best_asv | Replace unmapped raw reads with the nearest ASV |
| quality_profile | Sample quality scores |
| reconstruct | Reconstruct a longer region out of ASVs or consensus sequence... |
| seqhash | Individually hash biological sequences |
| summarize_sread | Summarize one or more reads as a 'tibble'. |
| tzara-package | tzara: Cluster long amplicons using dada2 denoising on... |
| tzara_sample | Sample amplicon sequences |
