combine_bigmaps: Combine raw and denoised reads from multiple regions of the...
In brendanf/tzara: Cluster long amplicons using dada2 denoising on variable regions
Description
Usage
Arguments
Details
Value
Description
Combine raw and denoised reads from multiple regions of the same sequences.
Usage
1
combine_bigmaps(dadamap, rawdata)
Arguments
dadamap
(dadamap object)
rawdata
(tibble) as returned by
summarize_sread
Details
Both of the inputs should be annotated with identifying columns to
uniquely identify the source derep objects;
this should happen automatically if derepFastq and
readFastq are called on a list of filenames (there
will be a column "name" in the outputs of dadamap and
summarize_sread).
Value
a tibble giving the sequences for each region
for each read (uniquely identified by all other columns)
brendanf/tzara documentation built on March 11, 2021, 5:40 a.m.
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Description Usage Arguments Details Value
Description
Combine raw and denoised reads from multiple regions of the same sequences.
Usage
1 | combine_bigmaps(dadamap, rawdata)
|
Arguments
dadamap |
( |
rawdata |
( |
Details
Both of the inputs should be annotated with identifying columns to
uniquely identify the source derep objects;
this should happen automatically if derepFastq and
readFastq are called on a list of filenames (there
will be a column "name" in the outputs of dadamap and
summarize_sread).
Value
a tibble giving the sequences for each region
for each read (uniquely identified by all other columns)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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