find_region_chimeras: Check for bimeras in a subset of regions

In brendanf/tzara: Cluster long amplicons using dada2 denoising on variable regions

Description

Check for bimeras in a subset of regions

Usage

find_region_chimeras(region_table, chimset, sample_column, read_column, ...)

Arguments

region_table	(data.frame containing all the regions in chimset)
chimset	(character vector, usually of length 3) regions to concatenate and then check for bimeras.
sample_column	(character scalar) extra column in region_table which identifies different samples; if present, use isBimeraDenovoTable instead of isBimeraDenovo.
read_column	(character scalar) column in region_table which identifies different reads.
...	passed on to isBimeraDenovoTable or isBimeraDenovo.

Value

an character vector giving the read IDs of region_table which were detected as bimeras.

brendanf/tzara documentation built on March 11, 2021, 5:40 a.m.