Man pages for brendanf/tzara
Cluster long amplicons using dada2 denoising on variable regions

add_derep_namesAdd sequence names to a derep object
cluster_consensusCalculate consensus of a cluster of sequences.
combine_bigmapsCombine raw and denoised reads from multiple regions of the...
combine_derepCombine DADA2 'derep' objects into master map
dadamapProduce a map between denoised sequences and their original...
extract_regionExtract regions from a set of sequences (maybe with...
find_all_region_chimerasFind chimeras in adjacent variable-conserved-variable domain...
find_region_chimerasCheck for bimeras in a subset of regions
has_alphabetTest if all characters in a character vector are members of...
map_or_consensusAssign consensus sequences to unmapped reads
map_to_best_asvReplace unmapped raw reads with the nearest ASV
reconstructReconstruct a longer region out of ASVs or consensus sequence...
seqhashIndividually hash biological sequences
summarize_sreadSummarize one or more reads as a 'tibble'.
brendanf/tzara documentation built on June 15, 2020, 9:20 p.m.