API for brendanf/tzara
Cluster long amplicons using dada2 denoising on variable regions

Global functions
.onLoad Source code
add_derep_names Man page Source code
add_derep_names.derep Man page Source code
add_derep_names.list Man page Source code
assemble_region_table Source code
cluster_consensus Man page Source code
cluster_consensus.XStringSet Man page Source code
cluster_consensus.character Man page Source code
combine_bigmaps Man page Source code
combine_derep Man page Source code
dadamap Man page Source code
dadamap.derep Source code
dadamap.list Source code
extract_region Man page Source code
extract_region.QualityScaledXStringSet Man page Source code
extract_region.ShortRead Man page Source code
extract_region.XStringSet Man page Source code
extract_region.character Man page Source code
extract_region.list Man page Source code
find_all_region_chimeras Man page
find_region_chimeras Man page
flog_toc Source code
has_alphabet Man page Source code
is_string_or_missing Source code
map_or_consensus Man page
map_to_best_asv Man page
odseq Source code
qsDNAss_to_sreadq Source code
reconstruct Man page Source code
reconstruct_region Source code
seqhash Man page Source code
seqhash.XStringSet Man page Source code
seqhash.character Man page Source code
sreadq_to_qsDNAss Source code
str_modify Source code
summarize_sread Man page Source code
summarize_sread.ShortReadQ Source code
summarize_sread.list Source code
brendanf/tzara documentation built on June 15, 2020, 9:20 p.m.