Files in brendanf/tzara
Cluster long amplicons using dada2 denoising on variable regions
.Rbuildignore
.github/workflows/check-bioc.yml
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/odseq.R
R/tzara-package.R
R/tzara.R
R/util.R
README.Rmd
README.md
codecov.yml
data/quality_profile.rda
data/tzara_sample.rda
inst/extdata/RDN37.fasta
man/add_derep_names.Rd
man/cluster_consensus.Rd
man/combine_bigmaps.Rd
man/combine_derep.Rd
man/dadamap.Rd
man/extract_region.Rd
man/figures/README-unnamed-chunk-18-1.png
man/figures/README-unnamed-chunk-18-2.png
man/figures/README-unnamed-chunk-20-1.png
man/find_all_region_chimeras.Rd
man/find_region_chimeras.Rd
man/has_alphabet.Rd
man/map_or_consensus.Rd
man/map_to_best_asv.Rd
man/quality_profile.Rd
man/reconstruct.Rd
man/seqhash.Rd
man/summarize_sread.Rd
man/tzara-package.Rd
man/tzara_sample.Rd
tests/testthat.R
tests/testthat/test-assemble_region_table.R
tests/testthat/test-extract_region.R
tests/testthat/test-hash.R
tests/testthat/test-reconstruct.R
tests/testthat/test-sread.R
tests/testthat/test-str_modify.R
tzara.Rproj
vignettes/.gitignore
vignettes/tzara.Rmd
