cluster_consensus()
with character inputs when names are
not given.cluster_consensus()
now gives a result for a single (non-NA
) unique
sequence, even if there are less than 3 copies.cluster_conensus()
by catching some cases where the alignment step
can be skipped.extract_region()
auto-detects the format of the output file, if given,
from the name.extract_region()
was not saving quality information
from the input to an output "fastq" file when the input was a "fastq" file or
QualityScaledXStringSet
."dir"
to dadamap()
, to specify the location of input files,
if derepFastq()
was originally called on a directory of files."seq_id"
and "filename"
not being passed correctly from
dadamap.list()
to dadamap.derep
.has_alphabet()
now works even if some of the input sequences are NA
."seq_id"
and "filename"
to dadamap()
, to make it more
user-friendly. Use of add_dada_names()
is now unnecessary.NEWS.md
file to track changes to the package.DNAStringSet
and QualityScaledDNAStringSet
in
extract_region()
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