View source: R/nh_analysis_GenerateR.R
nh_analysis_generateR | R Documentation |
nh_analysis_GenerateR
Merges simulated genotypes with the genotypes of unknown/experimental individuals, producing a file to be analyzed by NewHybrids. Will also output a dataframe containing the names of the individuals (including those that were simulated) in the NewHybrids formatted file.
nh_analysis_generateR(ReferencePopsData, UnknownIndivs,
sim.pops.include = c("Pure1", "Pure2"), output.name)
ReferencePopsData |
A file path to a either a NewHybrids or GENEPOP formatted file containing genotypes from the simulated ancestral populations. This can be the result of any of the freqbasedsim functions, or a file created using the function genepop_newhybrids from the package genepopedit |
UnknownIndivs |
A file path to a file containing the genotypes of the individuals to be analyzed for possible hybrid ancestry. This can either be a genepop format file, or a NewHybrids format file. Note - the number of loci and the names of the loci in ReferencePopsData and UnknownIndivs must be the same |
sim.pops.include |
Optional character vector list denoting which hybrid categories from the simulated data should be included in the output. The default is Pure Population 1 and Pure Population 2. |
output.name |
A character vector to be applied as the name of the output. |
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