ba_markerprofiles_allelematrix_search: ba_markerprofiles_allelematrix_search

In c5sire/brapi: Client to Access Breeding Databases Using BrAPI

Description

Gets markers in matrix format. If the format parameter is set to either csv or tsv the returned object is always a tibble object. If the format parameter is 'json' (default) the rclass parameter can be used to as in other functions.

Usage

ba_markerprofiles_allelematrix_search(con = NULL,
  markerprofileDbId = "", markerDbId = "", expandHomozygotes = FALSE,
  unknownString = "-", sepPhased = "|", sepUnphased = "/",
  format = "json", page = 0, pageSize = 10000, rclass = "tibble")

Arguments

con	brapi connection object
markerprofileDbId	character vector; default ”
markerDbId	character vector; default ”
expandHomozygotes	logical; default false
unknownString	chaaracter; default: '-'
sepPhased	character; default: '|'
sepUnphased	character; default: '/'
format	character; default: json; other: csv, tsv
page	integer; default: 0
pageSize	integer; default 1000
rclass	character; default: tibble

Value

data.frame

Note

The handling of long-running responses via asynch status messages is not yet implemented.

Author(s)

Reinhard Simon

References

github

See Also

Other markerprofiles: ba_markerprofiles_allelematrices_details, ba_markerprofiles_allelematrices_search_post, ba_markerprofiles_allelematrices_search, ba_markerprofiles_details, ba_markerprofiles_search

Other genotyping: ba_genomemaps_data_range, ba_genomemaps_data, ba_genomemaps_details, ba_genomemaps, ba_germplasm_attributes, ba_germplasm_markerprofiles, ba_germplasm_search_post, ba_germplasm_search, ba_germplasmattributes_attributes, ba_germplasmattributes_categories, ba_germplasmattributes_details, ba_markerprofiles_allelematrices_details, ba_markerprofiles_allelematrices_search_post, ba_markerprofiles_allelematrices_search, ba_markerprofiles_details, ba_markerprofiles_search, ba_markers_details, ba_markers_search_post, ba_markers_search

Examples

if (interactive()) {
  library(brapi)

  con <- ba_db()$testserver

  ba_markerprofiles_allelematrix_search(con)
}

c5sire/brapi documentation built on Oct. 17, 2019, 11:45 a.m.